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Have you ever craved a sweet treat that’s both delicious and packed with protein? These Greek Yogurt Protein Muffins are the perfect answer! Light, fluffy, and naturally sweetened, they make a fantastic breakfast, post-workout snack, or guilt-free dessert. With Greek yogurt as the star ingredient, these muffins stay incredibly moist while delivering a boost of protein and probiotics to keep you feeling satisfied. Plus, they’re easy to make, meal-prep friendly, and completely customizable—whether you prefer chocolate chips, fresh berries, or a touch of cinnamon. Ready to whip up a batch of these wholesome, protein-packed muffins? Let’s get started!
Why You’ll Love This Recipe
These Greek Yogurt Protein Muffins aren’t just another baked good—they’re a nutritious, protein-packed treat that satisfies both your cravings and your body’s needs. Whether you’re looking for a quick breakfast, a healthy snack, or a meal prep option, these muffins check all the boxes.
What Makes Them Special?
- Protein-Packed & Nutritious: Thanks to Greek yogurt and eggs, each muffin delivers a satisfying amount of protein to keep you energized.
- Naturally Sweetened: Made with honey or maple syrup, these muffins skip the refined sugars while still tasting delicious.
- Light, Fluffy, & Moist: The combination of oat flour and Greek yogurt creates a soft, tender texture—never dry or dense.
- Quick & Easy: No complicated techniques, just one bowl, simple ingredients, and 20 minutes in the oven.
- Completely Customizable: Add chocolate chips for a treat, berries for freshness, or cinnamon for warmth—the choice is yours!
A Muffin for Every Occasion
These muffins are perfect for busy mornings, post-workout snacks, and even kid-friendly lunchbox additions. Make a batch ahead of time, and you’ll always have a healthy, grab-and-go option ready. Whether you enjoy them fresh out of the oven or store them for later, they’re a guilt-free treat you’ll keep coming back to!
What You’ll Need
Here’s everything you need to make these Greek Yogurt Protein Muffins:
Wet Ingredients:
- 1 cup Greek yogurt – Adds moisture, protein, and probiotics for a healthy boost.
- 2 large eggs – Helps bind the ingredients and adds extra protein.
- ¼ cup honey or maple syrup – Naturally sweetens the muffins without refined sugar.
- 1 teaspoon vanilla extract – Enhances flavor with a warm, subtle sweetness.
Dry Ingredients:
- 1½ cups oat flour – A wholesome, fiber-rich alternative to refined flour.
- 1 teaspoon baking powder – Helps the muffins rise and stay fluffy.
- ½ teaspoon baking soda – Works with Greek yogurt to create a light, airy texture.
- ½ teaspoon cinnamon (optional) – Adds a cozy, warm flavor.
Optional Add-Ins:
- ½ cup chocolate chips – For a rich, indulgent touch.
- ½ cup fresh berries – Adds natural sweetness and bursts of flavor.
These simple, nutritious ingredients come together to create muffins that are both delicious and satisfying—perfect for any time of day!
Detailed Cooking Instructions
Making these Greek Yogurt Protein Muffins is simple and stress-free. Just follow these step-by-step instructions to get perfect, moist muffins every time!
1: Preheat & Prep
- Preheat your oven to 350°F (175°C).
- Line a 12-cup muffin tin with paper liners or lightly grease with cooking spray to prevent sticking.
2: Mix the Wet Ingredients
- In a large mixing bowl, whisk together the Greek yogurt, eggs, honey (or maple syrup), and vanilla extract until smooth and well combined.
3: Combine the Dry Ingredients
- In a separate bowl, whisk the oat flour, baking powder, baking soda, and cinnamon (if using) to ensure even distribution.
4: Mix the Batter
- Gradually fold the dry ingredients into the wet mixture, stirring gently with a spatula or spoon. Avoid overmixing—this keeps the muffins soft and fluffy.
- If you’re adding chocolate chips or berries, gently fold them into the batter at this stage.
5: Fill the Muffin Cups
- Using a spoon or cookie scoop, evenly divide the batter among the 12 muffin cups, filling each about ¾ full.
6: Bake to Perfection
- Place the muffin tin in the preheated oven and bake for 18–20 minutes or until a toothpick inserted into the center comes out clean.
- Keep an eye on them! Muffins should be lightly golden on top but still moist inside.
7: Cool & Enjoy
- Remove the muffins from the oven and let them cool in the pan for about 5 minutes.
- Transfer them to a wire rack to cool completely before enjoying.
Now, your homemade protein-packed muffins are ready to enjoy! Whether fresh out of the oven or stored for later, they’re a delicious and healthy treat for any occasion.
You Must Know

Before you dive into baking these Greek Yogurt Protein Muffins, here are some key tips and insights to help you get the best results every time.
1. The Secret to Extra Moist Muffins
- Greek yogurt is the key ingredient that keeps these muffins ultra-moist while adding a protein boost.
- Avoid overbaking—a few minutes too long can dry them out. Check for doneness by inserting a toothpick in the center; it should come out clean or with a few moist crumbs.
2. Make It Gluten-Free (If Needed)
- These muffins are naturally gluten-free if you use certified gluten-free oat flour.
- If you don’t have oat flour, you can make your own by blending rolled oats into a fine powder using a food processor.
3. Sweetener Swaps & Adjustments
- Honey and maple syrup both work well, but you can also use mashed bananas or applesauce for a natural sweetness boost.
- If using a sugar substitute, check the conversion ratio to ensure the muffins stay balanced in texture and flavor.
4. Best Storage & Meal Prep Tips
- Store muffins in an airtight container at room temperature for up to 3 days.
- Keep them in the refrigerator for up to a week for longer freshness.
- Freeze muffins in a ziplock bag for up to 3 months. Just microwave for 20–30 seconds to enjoy them warm again!
5. Customization is Key!
- For extra protein, stir in a scoop of unflavored or vanilla protein powder. You may need to add an extra tablespoon of yogurt to keep the batter moist.
- Add chopped nuts, coconut flakes, or seeds for extra crunch and texture.
- Love chocolate? Use dark chocolate chips for a rich, antioxidant boost.
By keeping these tips in mind, you’ll be able to personalize your muffins to fit your taste while keeping them healthy, delicious, and perfectly baked every time!
Frequently Asked Questions
You can store them in an airtight container at room temperature for up to 3 days. If you want them to last longer, refrigerate for up to a week, or freeze them for up to 3 months. To reheat, microwave for 20–30 seconds for a fresh-out-of-the-oven taste!
Yes! Simply use certified gluten-free oat flour or blend gluten-free rolled oats into a fine flour using a food processor.
Absolutely! While honey and maple syrup are great natural options, you can also use mashed bananas, applesauce, or a sugar substitute. Just keep in mind that using dry sweeteners may slightly alter the texture.
Yes! You can add 1 scoop of unflavored or vanilla protein powder to boost the protein content. If the batter seems too thick, add an extra tablespoon of Greek yogurt or a splash of milk to keep the texture soft and moist.
You can customize them with:
Chocolate chips for a sweet treat
Fresh or dried berries for a fruity burst
Chopped nuts or seeds for added crunch
Coconut flakes for extra flavor
If your muffins came out flat, it could be due to:
Expired baking powder or baking soda – Always check the freshness of your leavening agents.
Overmixing the batter – Stir until just combined to keep the texture light and fluffy.
Not preheating the oven – A properly heated oven helps muffins rise evenly.
Yes! Simply swap the Greek yogurt for dairy-free yogurt like almond or coconut yogurt. Keep in mind that this may slightly alter the flavor and texture.
Of course! Just reduce the baking time to 10–12 minutes and check with a toothpick for doneness.
These FAQs should help you get perfect muffins every time while allowing you to customize them to your taste and dietary needs!
Greek Yogurt Protein Muffins
- Prep Time: 10 minutes
- Cook Time: 18 minutes
- Total Time: 28 minutes
- Yield: 12 muffins
- Category: Bakes
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Greek Yogurt Protein Muffins are light, fluffy, and packed with protein! Naturally sweetened and made with oat flour, they’re a healthy, meal-prep-friendly snack perfect for breakfast or post-workout energy.
Ingredients
-
Wet Ingredients:
- 1 cup Greek yogurt
- 2 large eggs
- ¼ cup honey or maple syrup
- 1 teaspoon vanilla extract
Dry Ingredients:
- 1½ cups oat flour
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon cinnamon (optional)
Optional Add-Ins:
- ½ cup chocolate chips or fresh berries
Instructions
- Preheat oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease it.
- In a large mixing bowl, whisk together Greek yogurt, eggs, honey (or maple syrup), and vanilla extract until smooth.
- In a separate bowl, mix oat flour, baking powder, baking soda, and cinnamon.
- Gradually combine dry ingredients with the wet ingredients, stirring gently. Do not overmix.
- Fold in chocolate chips or berries if using.
- Divide the batter evenly into 12 muffin cups, filling about ¾ full.
- Bake for 18–20 minutes, or until a toothpick inserted in the center comes out clean.
- Let muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
Notes
- For extra protein, add a scoop of vanilla protein powder and an extra tablespoon of Greek yogurt.
- These muffins store well in an airtight container at room temperature for 3 days or refrigerated for up to a week.
- Freeze for up to 3 months and reheat in the microwave for a quick snack!
Nutrition
- Serving Size: 1 muffin
- Calories: ~120 kcal
- Sugar: 6g
- Sodium: 100mg
- Fat: 3g
- Saturated Fat: 1g
- Unsaturated Fat: 2g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 2g
- Protein: 6g
- Cholesterol: 30mg
Keywords: Greek yogurt protein muffins, healthy muffins, high-protein snacks, meal prep muffins, oat flour muffins
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Love this recipe? Save it for later on Pinterest! These Greek Yogurt Protein Muffins are a delicious, high-protein snack that’s perfect for meal prep, post-workout fuel, or a healthy breakfast option.
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